Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
Adl, Sina M.; Bass, David; Lane, Christopher E.; Lukes, Julius; Schoch, Conrad L.; Smirnov, Alexey; Agatha, Sabine; Berney, Cedric; Brown, Matthew W.; Burki, Fabien; Cardenas, Paco; Cepicka, Ivan; Chistyakova, Lyudmila; del Campo, Javier; Dunthorn, Micah; Edvardsen, Bente; Eglit, Yana; Guillou, Laure; Hampl, Vladimir; Heiss, Aaron A.; Hoppenrath, Mona; James, Timothy Y.; Karnkowska, Anna; Karpov, Sergey; Kim, Eunsoo; Kolisko, Martin; Kudryavtsev, Alexander; Lahr, Daniel J. G.; Lara, Enrique; Le Gall, Line; Lynn, Denis H.; Mann, David G.; Massana, Ramon; Mitchell, Edward A. D.; Morrow, Christine; Park, Jong Soo; Pawlowski, Jan W.; Powell, Martha J.; Richter, Daniel J.; Rueckert, Sonja; Shadwick, Lora; Shimano, Satoshi; Spiegel, Frederick W.; Torruella, Guifre; Youssef, Noha; Zlatogursky, Vasily; Zhang, Qianqian
Source PublicationJOURNAL OF EUKARYOTIC MICROBIOLOGY
ISSN1066-5234
2019-01
Volume66Issue:1Pages:4-119
KeywordAlgae amoebae biodiversity ciliate ecology flagellate fungus microbiology parasite plankton protozoa systematics taxonomy
MOST Discipline CatalogueMicrobiology
DOI10.1111/jeu.12691
Contribution Rank[Adl, Sina M.] Univ Saskatchewan, Dept Soil Sci, Coll Agr & Bioresources, 51 Campus Dr, Saskatoon, SK S7N 5A8, Canada; [Bass, David] Nat Hist Museum, Dept Life Sci, Cromwell Rd, London SW7 5BD, England; [Bass, David] CEFAS, Barrack Rd, Weymouth DT4 8UB, Dorset, England; [Lane, Christopher E.] Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA; [Lukes, Julius; Kolisko, Martin] Czech Acad Sci, Biol Ctr, Inst Parasitol, Ceske Budejovice 37005, Czech Republic; [Lukes, Julius] Univ South Bohemia, Fac Sci, Ceske Budejovice 37005, Czech Republic; [Schoch, Conrad L.] Natl Inst Biotechnol Informat, Natl Lib Med, NIH, Bethesda, MD 20892 USA; [Smirnov, Alexey; Karpov, Sergey; Kudryavtsev, Alexander; Zlatogursky, Vasily] St Petersburg State Univ, Fac Biol, Dept Invertebrate Zool, St Petersburg 199034, Russia; [Agatha, Sabine] Univ Salzburg, Dept Biosci, Hellbrunnerstr 34, A-5020 Salzburg, Austria; [Berney, Cedric] CNRS, UMR 7144 AD2M, Grp Evolut Protistes & Ecosyst Pelag, Stn Biol Roscoff, Pl Georges Teissier, F-29680 Roscoff, France; [Brown, Matthew W.] Mississippi State Univ, Dept Biol Sci, Starkville, MS 39762 USA; [Brown, Matthew W.] Mississippi State Univ, Inst Genom Biocomp & Biotechnol, Starkville, MS 39762 USA; [Burki, Fabien] Uppsala Univ, Dept Organismal Biol, Program Systemat Biol, Sci Life Lab, S-75236 Uppsala, Sweden; [Cardenas, Paco] Uppsala Univ, Dept Med Chem, Pharmacognosy, BMC Box 574, SE-75123 Uppsala, Sweden; [Cepicka, Ivan] Charles Univ Prague, Dept Zool, Fac Sci, Vinicna 7, CR-12844 Prague, Czech Republic; [Chistyakova, Lyudmila] St Petersburg State Univ, Core Facil Ctr Culture Collect Microorganisms, St Petersburg 198504, Russia; [del Campo, Javier; Massana, Ramon] CSIC, Inst Ciencies Mar, Passeig Maritim Barceloneta 37-49, E-08003 Barcelona, Catalonia, Spain; [Dunthorn, Micah] Univ Kaiserslautern, Dept Ecol, Erwin Schroedinger St, D-67663 Kaiserslautern, Germany; [Dunthorn, Micah] Univ Duisburg Essen, Dept Eukaryot Microbiol, Univ Str 5, D-45141 Essen, Germany; [Edvardsen, Bente] Univ Oslo, Dept Biosci, POB 1066 Blindern, N-0316 Oslo, Norway; [Eglit, Yana] Dalhousie Univ, Dept Biol, Halifax B3H 4R2, NS, Canada; [Guillou, Laure] Univ Paris 06, Sorbonne Univ, Paris 6, CNRS,UMR 7144 AD2M,Stn Biol Roscoff, Pl Georges Teissier,,CS90074, F-29688 Roscoff, France; [Hampl, Vladimir] Charles Univ Prague, Dept Parasitol, Fac Sci, BIOCEV, Prumyslov 595, Vestec 25242, Czech Republic; [Heiss, Aaron A.; Kim, Eunsoo] Amer Museum Nat Hist, Dept Invertebrate Zool, New York, NY 10024 USA; [Hoppenrath, Mona] DZMB German Ctr Marine Biodivers Res, D-26382 Wilhelmshaven, Germany; [James, Timothy Y.] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA; [Karnkowska, Anna] Univ Warsaw, Dept Mol Phylogenet & Evolut, PL-02089 Warsaw, Poland; [Karpov, Sergey; Kudryavtsev, Alexander] RAS, Lab Parasit Worms & Protistol, Zool Inst, St Petersburg 199034, Russia; [Lahr, Daniel J. G.] Univ Sao Paulo, Dept Zool, Inst Biosci, Matao Travessa 14 Cidade Univ, BR-05508090 Sao Paulo, SP, Brazil; [Lara, Enrique; Mitchell, Edward A. D.] Univ Neuchatel, Lab Soil Biodivers, Rue Emile Argand 11, CH-2000 Neuchatel, Switzerland; [Lara, Enrique] CSIC, Real Jardim Bot,Plaza Murillo 2, E-28014 Madrid, Spain; [Le Gall, Line] Sorbonne Univ, Museum Natl Hist Nat, Inst Systemat Evolut Biodiversit, 57 Rue Cuvier,CP 39, F-75005 Paris, France; [Lynn, Denis H.] Univ Guelph, Dept Integrat Biol, Summerlee Sci Complex, Guelph, ON N1G 2W1, Canada; [Lynn, Denis H.] Univ British Columbia, Dept Zool, 4200-6270 Univ Blvd, Vancouver, BC V6T 1Z4, Canada; [Mann, David G.] Royal Bot Garden, Edinburgh EH3 5LR, Midlothian, Scotland; [Mann, David G.] Inst Agrifood Res & Technol, C Poble Nou Km 5-5, E-43540 San Carlos de la Rapita, Spain; [Mitchell, Edward A. D.] Jardin Bot Neuchatel,Chemin Perthuis du Salut 58, CH-2000 Neuchatel, Switzerland; [Morrow, Christine] Natl Museums Northern Ireland, Dept Nat Sci, 153 Bangor Rd, Holywood BT18 0EU, England; [Park, Jong Soo] Kyungpook Natl Univ, Sch Earth Syst Sci, Dept Oceanog, Daegu, South Korea; [Park, Jong Soo] Kyungpook Natl Univ, Sch Earth Syst Sci, Kyungpook Inst Oceanog, Daegu, South Korea; [Pawlowski, Jan W.] Univ Geneva, Dept Genet & Evolut, CH-1211 Geneva 4, Switzerland; [Powell, Martha J.] Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA; [Richter, Daniel J.] Univ Pompeu Fabra, CSIC, Inst Biol Evolut, Passeig Maritim Barceloneta 37-49, Barcelona 08003, Spain; [Rueckert, Sonja] Edinburgh Napier Univ, Sch Appl Sci, Edinburgh EH11 4BN, Midlothian, Scotland; [Shadwick, Lora; Spiegel, Frederick W.] Univ Arkansas, Dept Biol Sci, Fayetteville, AR 72701 USA; [Shimano, Satoshi] Hosei Univ, Sci Res Ctr, Chiyoda Ku, 2-17-1 Fujimi, Tokyo, Japan; [Torruella, Guifre] Univ Paris XI, Lab Evolut & Systemat, F-91405 Orsay, France; [Youssef, Noha] Oklahoma State Univ, Dept Microbiol & Mol Genet, Stillwater, OK 74074 USA; [Zlatogursky, Vasily] Uppsala Univ, Dept Organismal Biol, Systemat Biol Program, SE-75236 Uppsala, Sweden; [Zhang, Qianqian] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China
Department海岸带生物资源高效利用研究与发展中心
AbstractThis revision of the classification of eukaryotes follows that of Adl et al., 2012 [J. Euk. Microbiol. 59(5)] and retains an emphasis on protists. Changes since have improved the resolution of many nodes in phylogenetic analyses. For some clades even families are being clearly resolved. As we had predicted, environmental sampling in the intervening years has massively increased the genetic information at hand. Consequently, we have discovered novel clades, exciting new genera and uncovered a massive species level diversity beyond the morphological species descriptions. Several clades known from environmental samples only have now found their home. Sampling soils, deeper marine waters and the deep sea will continue to fill us with surprises. The main changes in this revision are the confirmation that eukaryotes form at least two domains, the loss of monophyly in the Excavata, robust support for the Haptista and Cryptista. We provide suggested primer sets for DNA sequences from environmental samples that are effective for each clade. We have provided a guide to trophic functional guilds in an appendix, to facilitate the interpretation of environmental samples, and a standardized taxonomic guide for East Asian users.
SubtypeArticle
Funding OrganizationNSERC [249889-2007] ; NERC [NE/H009426/1, NE/H000887/1] ; NSF [DEB-1455611, 1456054, 1541510, DEB 1557102] ; Science for Life Laboratory ; EU-Horizon 2020 research and innovation program through the SponGES project [679849] ; CSF [18-18699S, GA18-28103S] ; RCN [Tax-MArc 268286/GMR] ; ANR HAPAR [ANR-14-CE02-0007] ; ERDF ; MEYS ; ERC [771592 CZ 1.05/1.1.00/02.0109 BIOCEV, CZ LL1601, OPVVV 16_019/0000759] ; RSF [16-14-10302, 17-14-01391] ; CAM [2017-T1/AMB-5210] ; program "Atraccion de talentos" from the Consejeria de Educacion, Juventud y Deporte, Comunidad de Madrid [2017-T1/AMB-5210] ; Beatriu de Pinos postdoctoral programme of the Government of Catalonia's Secretariat for Universities and Research of the Ministry of Economy and Knowledge ; National Library of Medicine, National Institutes of Health ; RFBR [16-04-01454, 16-34-60102 mol-a-dk] ; Gordon and Betty Moore Foundation ; [NIH-AI124092] ; [VR/2017-04563]
Indexed BySCI
Language英语
WOS KeywordAMOEBOZOA ; PHYLOGENY ; GEN. ; NOV ; EVOLUTION ; LINEAGES ; TAXONOMY ; REVEALS
WOS Research AreaMicrobiology
WOS IDWOS:000456186200001
Citation statistics
Cited Times:411[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.yic.ac.cn/handle/133337/24610
Collection海岸带生物学与生物资源利用重点实验室_海岸带生物资源高效利用研究与发展中心
海岸带生物学与生物资源利用重点实验室_海岸带生物学与生物资源保护实验室
Affiliation1.Univ Saskatchewan, Dept Soil Sci, Coll Agr & Bioresources, 51 Campus Dr, Saskatoon, SK S7N 5A8, Canada;
2.Nat Hist Museum, Dept Life Sci, Cromwell Rd, London SW7 5BD, England;
3.CEFAS, Barrack Rd, Weymouth DT4 8UB, Dorset, England;
4.Univ Rhode Isl, Dept Biol Sci, Kingston, RI 02881 USA;
5.Czech Acad Sci, Biol Ctr, Inst Parasitol, Ceske Budejovice 37005, Czech Republic;
6.Univ South Bohemia, Fac Sci, Ceske Budejovice 37005, Czech Republic;
7.Natl Inst Biotechnol Informat, Natl Lib Med, NIH, Bethesda, MD 20892 USA;
8.St Petersburg State Univ, Fac Biol, Dept Invertebrate Zool, St Petersburg 199034, Russia;
9.Univ Salzburg, Dept Biosci, Hellbrunnerstr 34, A-5020 Salzburg, Austria;
10.CNRS, UMR 7144 AD2M, Grp Evolut Protistes & Ecosyst Pelag, Stn Biol Roscoff, Pl Georges Teissier, F-29680 Roscoff, France;
11.Mississippi State Univ, Dept Biol Sci, Starkville, MS 39762 USA;
12.Mississippi State Univ, Inst Genom Biocomp & Biotechnol, Starkville, MS 39762 USA;
13.Uppsala Univ, Dept Organismal Biol, Program Systemat Biol, Sci Life Lab, S-75236 Uppsala, Sweden;
14.Uppsala Univ, Dept Med Chem, Pharmacognosy, BMC Box 574, SE-75123 Uppsala, Sweden;
15.Charles Univ Prague, Dept Zool, Fac Sci, Vinicna 7, CR-12844 Prague, Czech Republic;
16.St Petersburg State Univ, Core Facil Ctr Culture Collect Microorganisms, St Petersburg 198504, Russia;
17.CSIC, Inst Ciencies Mar, Passeig Maritim Barceloneta 37-49, E-08003 Barcelona, Catalonia, Spain;
18.Univ Kaiserslautern, Dept Ecol, Erwin Schroedinger St, D-67663 Kaiserslautern, Germany;
19.Univ Duisburg Essen, Dept Eukaryot Microbiol, Univ Str 5, D-45141 Essen, Germany;
20.Univ Oslo, Dept Biosci, POB 1066 Blindern, N-0316 Oslo, Norway;
21.Dalhousie Univ, Dept Biol, Halifax B3H 4R2, NS, Canada;
22.Univ Paris 06, Sorbonne Univ, Paris 6, CNRS,UMR 7144 AD2M,Stn Biol Roscoff, Pl Georges Teissier,,CS90074, F-29688 Roscoff, France;
23.Charles Univ Prague, Dept Parasitol, Fac Sci, BIOCEV, Prumyslov 595, Vestec 25242, Czech Republic;
24.Amer Museum Nat Hist, Dept Invertebrate Zool, New York, NY 10024 USA;
25.DZMB German Ctr Marine Biodivers Res, D-26382 Wilhelmshaven, Germany;
26.Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA;
27.Univ Warsaw, Dept Mol Phylogenet & Evolut, PL-02089 Warsaw, Poland;
28.Univ Sao Paulo, Dept Zool, Inst Biosci, Matao Travessa 14 Cidade Univ, BR-05508090 Sao Paulo, SP, Brazil;
29.Univ Neuchatel, Lab Soil Biodivers, Rue Emile Argand 11, CH-2000 Neuchatel, Switzerland;
30.CSIC, Real Jardim Bot,Plaza Murillo 2, E-28014 Madrid, Spain;
31.Sorbonne Univ, Museum Natl Hist Nat, Inst Systemat Evolut Biodiversit, 57 Rue Cuvier,CP 39, F-75005 Paris, France;
32.Univ Guelph, Dept Integrat Biol, Summerlee Sci Complex, Guelph, ON N1G 2W1, Canada;
33.Univ British Columbia, Dept Zool, 4200-6270 Univ Blvd, Vancouver, BC V6T 1Z4, Canada;
34.Royal Bot Garden, Edinburgh EH3 5LR, Midlothian, Scotland;
35.Inst Agrifood Res & Technol, C Poble Nou Km 5-5, E-43540 San Carlos de la Rapita, Spain;
36.Jardin Bot Neuchatel,Chemin Perthuis du Salut 58, CH-2000 Neuchatel, Switzerland;
37.Natl Museums Northern Ireland, Dept Nat Sci, 153 Bangor Rd, Holywood BT18 0EU, England;
38.Kyungpook Natl Univ, Sch Earth Syst Sci, Dept Oceanog, Daegu, South Korea;
39.Kyungpook Natl Univ, Sch Earth Syst Sci, Kyungpook Inst Oceanog, Daegu, South Korea;
40.Univ Geneva, Dept Genet & Evolut, CH-1211 Geneva 4, Switzerland;
41.Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA;
42.Univ Pompeu Fabra, CSIC, Inst Biol Evolut, Passeig Maritim Barceloneta 37-49, Barcelona 08003, Spain;
43.Edinburgh Napier Univ, Sch Appl Sci, Edinburgh EH11 4BN, Midlothian, Scotland;
44.Univ Arkansas, Dept Biol Sci, Fayetteville, AR 72701 USA;
45.Hosei Univ, Sci Res Ctr, Chiyoda Ku, 2-17-1 Fujimi, Tokyo, Japan;
46.Univ Paris XI, Lab Evolut & Systemat, F-91405 Orsay, France;
47.Oklahoma State Univ, Dept Microbiol & Mol Genet, Stillwater, OK 74074 USA;
48.Uppsala Univ, Dept Organismal Biol, Systemat Biol Program, SE-75236 Uppsala, Sweden;
49.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China
Recommended Citation
GB/T 7714
Adl, Sina M.,Bass, David,Lane, Christopher E.,et al. Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes[J]. JOURNAL OF EUKARYOTIC MICROBIOLOGY,2019,66(1):4-119.
APA Adl, Sina M..,Bass, David.,Lane, Christopher E..,Lukes, Julius.,Schoch, Conrad L..,...&Zhang, Qianqian.(2019).Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.JOURNAL OF EUKARYOTIC MICROBIOLOGY,66(1),4-119.
MLA Adl, Sina M.,et al."Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes".JOURNAL OF EUKARYOTIC MICROBIOLOGY 66.1(2019):4-119.
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