| Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean |
| Zhang, DY; Wan, Q; He, XL; Ning, LH; Huang, YH; Xu, ZL; Liu, J; Shao, HB; Shao, HB (reprint author), Jiangsu Acad Agr Sci, Inst Biotechnol, Prov Key Lab Agrobiol, Nanjing 210014, Jiangsu, Peoples R China. Email:cotton.z@126.com; shaohongbuchu@126.com
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| 发表期刊 | SCIENCE OF THE TOTAL ENVIRONMENT
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| ISSN | 0048-9697
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| 2016-10-15
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| 卷号 | 568页码:899-909 |
| 关键词 | Gmanks
Bioinformatics Analyses
Gmank39-like
Salt Stress
Expression
Subcellular Localization
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| DOI | 10.1016/j.scitotenv.2016.06.078
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| 产权排序 | [Zhang, Dayong; Wan, Qun; He, Xiaolan; Ning, Lihua; Huang, Yihong; Xu, Zhaolong; Liu, Jia; Shao, Hongbo] Jiangsu Acad Agr Sci, Inst Biotechnol, Prov Key Lab Agrobiol, Nanjing 210014, Jiangsu, Peoples R China; [Shao, Hongbo] Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China |
| 作者部门 | 海岸带生物学与生物资源利用所重点实验室
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| 英文摘要 | Ankyrin repeats (ANK) gene family are common in diverse organisms and play important roles in cell growth, development and response to environmental stresses. Recently, genome-wide identification and evolutionary analyses of the ANK gene family have been carried out in Arabidopsis, rice and maize. However, little is known about the ANK genes in the whole soybean genome. In this study, we described the identification and structural characterization of 162ANK genes in soybean (GmANK). Then, comprehensive bioinformatics analyses of GmANK genes family were performed including gene locus, phylogenetic, domain composition analysis, chromosomal localization and expression profiling. Domain composition analyses showed that GmANK proteins formed eleven subfamilies in soybean. In sicilo expression analysis of these GmANK genes demonstrated that GmANK genes showa diverse/various expression pattern, suggesting that functional diversification of GmANK genes family. Based on digital gene expression profile (DGEP) data between cultivated soybean and wild type under salt treatment, some GmANKs related to salt/drought response were investigated. Moreover, the expression pattern and subcellular localization of GmANK6 were performed. The results will provide important clues to explore ANK genes expression and function in future studies in soybean. (C) 2016 Elsevier B.V. All rights reserved. |
| 文章类型 | Article
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| 资助机构 | National Science Foundation of China(31101166)
; Jiangsu Natural Science Foundation, China(BK20151364)
; Shuangchuang Talent Plan of Jiangsu Province, China
; Jiangsu Agriculture Science and Technology Innovation Fund (JASTIF)(CX(15)1005)
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| 收录类别 | SCI
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| 语种 | 英语
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| 关键词[WOS] | ARABIDOPSIS-THALIANA
; PROTEIN
; EXPRESSION
; PROTOPLASTS
; SYSTEM
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| 研究领域[WOS] | Environmental Sciences & Ecology
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| WOS记录号 | WOS:000382258300090
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| 引用统计 |
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| 文献类型 | 期刊论文
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| 条目标识符 | http://ir.yic.ac.cn/handle/133337/17135
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| 专题 | 海岸带生物学与生物资源利用重点实验室_海岸带生物学与生物资源保护实验室
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| 通讯作者 | Zhang, DY; Shao, HB (reprint author), Jiangsu Acad Agr Sci, Inst Biotechnol, Prov Key Lab Agrobiol, Nanjing 210014, Jiangsu, Peoples R China. Email:cotton.z@126.com; shaohongbuchu@126.com |
推荐引用方式
GB/T 7714 |
Zhang, DY,Wan, Q,He, XL,et al. Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean[J]. SCIENCE OF THE TOTAL ENVIRONMENT,2016,568:899-909.
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| APA |
Zhang, DY.,Wan, Q.,He, XL.,Ning, LH.,Huang, YH.,...&shaohongbuchu@126.com.(2016).Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean.SCIENCE OF THE TOTAL ENVIRONMENT,568,899-909.
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| MLA |
Zhang, DY,et al."Genome-wide characterization of the ankyrin repeats gene family under salt stress in soybean".SCIENCE OF THE TOTAL ENVIRONMENT 568(2016):899-909.
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