Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

doi:10.1038/s41559-018-0710-4

YIC-IR

	Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle
	Murat, Claude 1; Payen, Thibaut 1; Noel, Benjamin 2; Kuo, Alan 3; Morin, Emmanuelle 1; Chen, Juan 1,4,5; Kohler, Annegret 1; Krizsan, Krisztina 6; Balestrini, Raffaella 7; Da Silva, Corinne 2; Montanini, Barbara 8; Hainaut, Mathieu 9; Levati, Elisabetta 8; Barry, Kerrie W.3; Belfiori, Beatrice 10; Cichocki, Nicolas 1; Clum, Alicia 3; Dockter, Rhyan B.3; Fauchery, Laure 1; Guy, Julie 2; Iotti, Mirco 11; Le Tacon, Francois 1; Lindquist, Erika A.3; Lipzen, Anna 3; Malagnac, Fabienne 12; Mello, Antonietta 7; Molinier, Virginie 13,14; Miyauchi, Shingo 1; Poulain, Julie 2; Riccioni, Claudia 10; Rubini, Andrea 10; Sitrit, Yaron 15; Splivallo, Richard 16; Traeger, Stefanie 17; Wang, Mei 3; Zifcakova, Lucia 18; Wipf, Daniel 13; Zambonelli, Alessandra 19; Paolocci, Francesco 10; Nowrousian, Minou 17; Ottonello, Simone 8; Baldrian, Petr 18; Spatafora, Joseph W.20; Henrissat, Bernard 9,21,22; Nagy, Laszlo G.6; Aury, Jean-Marc 2; Wincker, Patrick 2; Grigoriev, Igor, V 3,23; Bonfante, Paola 24; Martin, Francis M.1,25
发表期刊	NATURE ECOLOGY & EVOLUTION
ISSN	2397-334X
	2018-12-01
卷号	2 期号:12 页码:1956-1965
DOI	10.1038/s41559-018-0710-4
通讯作者	Murat, Claude(claude.murat@inra.fr) ; Martin, Francis M.(francis.martin@inra.fr)
英文摘要	Tuberaceae is one of the most diverse lineages of symbiotic truffle-forming fungi. To understand the molecular underpinning of the ectomycorrhizal truffle lifestyle, we compared the genomes of Piedmont white truffle (Tuber magnatum), Perigord black truffle (Tuber melanosporum), Burgundy truffle (Tuber aestivum), pig truffle (Choiromyces venosus) and desert truffle (Terfezia boudieri) to saprotrophic Pezizomycetes. Reconstructed gene duplication/loss histories along a time-calibrated phylogeny of Ascomycetes revealed that Tuberaceae-specific traits may be related to a higher gene diversification rate. Genomic features in Tuber species appear to be very similar, with high transposon content, few genes coding lignocellulose-degrading enzymes, a substantial set of lineage-specific fruiting-body-upregulated genes and high expression of genes involved in volatile organic compound metabolism. Developmental and metabolic pathways expressed in ectomycorrhizae and fruiting bodies of T. magnatum and T. melanosporum are unexpectedly very similar, owing to the fact that they diverged -100 Ma. Volatile organic compounds from pungent truffle odours are not the products of Tuber-specific gene innovations, but rely on the differential expression of an existing gene repertoire. These genomic resources will help to address fundamental questions in the evolution of the truffle lifestyle and the ecology of fungi that have been praised as food delicacies for centuries.
资助机构	French National Research Agency through the project SYSTRUF ; French National Research Agency through the project SYMWOOD (Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems) ; Office of Science of the US Department of Energy ; France Genomique ; Region Lorraine Research Council ; European Commission (European Regional Development Fund) ; University of Parma ; Interuniversity Consortium for Biotechnologies ; Piedmont Region ; Czech Science Foundation ; German Research Foundation ; Department of General and Molecular Botany
收录类别	SCI
语种	英语
关键词[WOS]	MECHANISMS ; MYCORRHIZAL ; MICROBIOME ; ECOLOGY
研究领域[WOS]	Environmental Sciences & Ecology ; Evolutionary Biology
WOS记录号	WOS:000450904100023
引用统计	被引频次：75[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.yic.ac.cn/handle/133337/34663
专题	中国科学院烟台海岸带研究所
通讯作者	Murat, Claude; Martin, Francis M.
作者单位	1.Univ Lorraine, Ctr INRA Grand Est Nancy, Unite Mixte Rech INRA 1136, Interact Arbres Microorganismes,INRA, Champenoux, France 2.Inst Genom, Commissariat Energie Atom, Genoscope, Evry, France 3.US DOE, Joint Genome Inst, Walnut Creek, CA USA 4.Chinese Acad Med Sci, Inst Med Plant Dev, Beijing, Peoples R China 5.Peking Union Med Coll, Beijing, Peoples R China 6.Hungarian Acad Sci, Biol Res Ctr, Synthet & Syst Biol Unit, Szeged, Hungary 7.CNR, Inst Sustainable Plant Protect, Torino Unit, Turin, Italy 8.Univ Parma, Dept Chem Life Sci & Environm Sustainabil, Lab Biochem & Mol Biol, Parma, Italy 9.Aix Marseille Univ, Architecture & Fonct Macromol Biol, Marseille, France 10.UOS Perugia, Ist Biosci Biorisorse, CNR IBBR, Perugia, Italy 11.Univ Aquila, Dept Life Hlth & Environm Sci, Laquila, Italy 12.Univ Paris Sud, Univ Paris Saclay, Inst Integrat Biol Cell, CEA,CNRS, Gif Sur Yvette, France 13.INRA, UMR Agroecol AgroSup 1347, UB, Pole IPM ERL CNRS 6300, Dijon, France 14.Univ Montpellier, Univ Paul Valery Montpellier, UMR CEFE 5175, EPHE,INSERM,CNRS, Campus CNRS, Montpellier, France 15.Ben Gurion Univ Negev, Jacob Blaustein Inst Desert Res, Bergman Campus, Beer Sheva, Israel 16.Goethe Univ Frankfurt, Inst Mol Biosci, Frankfurt, Germany 17.Ruhr Univ Bochum, Lehrstuhl Allgemeine & Mol Bot, Bochum, Germany 18.CAS, Inst Microbiol, Lab Environm Microbiol, Prague, Czech Republic 19.Univ Bologna, Dept Agr & Food Sci, Bologna, Italy 20.Oregon State Univ, Dept Bot & Plant Pathol, Corvallis, OR 97331 USA 21.CNRS, UMR 7257, Marseille, France 22.King Abdulaziz Univ, Dept Biol Sci, Jeddah, Saudi Arabia 23.Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA 24.Univ Torino, Dept Life Sci & Syst Biol, Turin, Italy 25.Beijing Forestry Univ, Inst Microbiol, Beijing, Peoples R China
推荐引用方式 GB/T 7714	Murat, Claude,Payen, Thibaut,Noel, Benjamin,et al. Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle[J]. NATURE ECOLOGY & EVOLUTION,2018,2(12):1956-1965.
APA	Murat, Claude.,Payen, Thibaut.,Noel, Benjamin.,Kuo, Alan.,Morin, Emmanuelle.,...&Martin, Francis M..(2018).Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle.NATURE ECOLOGY & EVOLUTION,2(12),1956-1965.
MLA	Murat, Claude,et al."Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle".NATURE ECOLOGY & EVOLUTION 2.12(2018):1956-1965.