| Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress | |
| Tang, Xiaoli1,5; Wang, Hongyan1,3,5; Shao, Chuyang4; Shao, Hongbo1,2; Shao, HB (reprint author), Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China. shaohongbochu@126.com | |
| 发表期刊 | PLOS ONE
 |
| ISSN | 1932-6203 |
| 2015-04-22 | |
| 卷号 | 10期号:4页码:e0124421 |
| 关键词 | Transcription Factor Salinity Tolerance Betula-platyphylla Seashore Mallow Arabidopsis Drought Cold Acid Biodiesel Profile |
| DOI | 10.1371/journal.pone.0124421 |
| 产权排序 | [Tang, Xiaoli; Wang, Hongyan; Shao, Hongbo] Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China; [Shao, Hongbo] Jiangsu Acad Agr Sci, Inst Biotechnol, Nanjing 210014, Peoples R China; [Wang, Hongyan] China Agr Univ, Yantai Acad, Yantai 264670, Peoples R China; [Shao, Chuyang] Shandong Agr Univ, Tai An 271018, Shandong, Peoples R China; [Tang, Xiaoli; Wang, Hongyan] Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 作者部门 | 海岸带生物学与生物资源利用所重点实验室 |
| 英文摘要 | Soil salinization is becoming a serious threat to crop yield all over the world. Nowadays, acquainting the specific molecular mechanisms underlying various abiotic stresses especially to salt stress should be of great importance. While the development of the high-throughout sequencing technology promoted the progress powerfully. The intricate perception, transduction and regulation mechanisms underlying salt stress are being illustrated more and more clearly. As a perennial halophytic plant, Kosteletzkya virginica is able to help us to understand the mechanisms more directly and effectively. We carried out the whole transcriptome analysis on young seedlings with or without salt treatment through high-throughout sequencing technology. The results revealed that the numbers of different expressed transcripts between control and different treatments are 4145 and 9134, respectively. The ORF prediction suggested that there were 94308 ORF out of the 103489 (91.10%) total transcripts. We also carried out further differential expression analysis through gene ontology (GO) classification, cluster of orthologous groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. In a word, our transcriptome study on Kosteletzkya virginica would provide direct and effective references for researches on molecular mechanisms of salt-tolerance, extending our view of salt tolerance in plant further. Above all, the related report in this paper is the first about Kosteletzkya virginica.; Soil salinization is becoming a serious threat to crop yield all over the world. Nowadays, acquainting the specific molecular mechanisms underlying various abiotic stresses especially to salt stress should be of great importance. While the development of the high-throughout sequencing technology promoted the progress powerfully. The intricate perception, transduction and regulation mechanisms underlying salt stress are being illustrated more and more clearly. As a perennial halophytic plant, Kosteletzkya virginica is able to help us to understand the mechanisms more directly and effectively. We carried out the whole transcriptome analysis on young seedlings with or without salt treatment through high-throughout sequencing technology. The results revealed that the numbers of different expressed transcripts between control and different treatments are 4145 and 9134, respectively. The ORF prediction suggested that there were 94308 ORF out of the 103489 (91.10%) total transcripts. We also carried out further differential expression analysis through gene ontology (GO) classification, cluster of orthologous groups (COG) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. In a word, our transcriptome study on Kosteletzkya virginica would provide direct and effective references for researches on molecular mechanisms of salt-tolerance, extending our view of salt tolerance in plant further. Above all, the related report in this paper is the first about Kosteletzkya virginica. |
| 文章类型 | Article |
| 资助机构 | Science & Technology - Other Topics |
| 收录类别 | SCI |
| 语种 | 英语 |
| 关键词[WOS] | TRANSCRIPTION FACTOR ; SALINITY TOLERANCE ; BETULA-PLATYPHYLLA ; SEASHORE MALLOW ; ARABIDOPSIS ; DROUGHT ; COLD ; ACID ; BIODIESEL ; PROFILE |
| 研究领域[WOS] | Science & Technology - Other Topics |
| WOS记录号 | WOS:000353331500085 |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.yic.ac.cn/handle/133337/8505 |
| 专题 | 海岸带生物学与生物资源利用重点实验室_海岸带生物学与生物资源保护实验室 |
| 通讯作者 | Shao, HB (reprint author), Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China. shaohongbochu@126.com |
| 作者单位 | 1.Chinese Acad Sci, Yantai Inst Coastal Zone Res YIC, Key Lab Coastal Biol & Bioresources Utilizat, Yantai 264003, Peoples R China 2.Jiangsu Acad Agr Sci, Inst Biotechnol, Nanjing 210014, Peoples R China 3.China Agr Univ, Yantai Acad, Yantai 264670, Peoples R China 4.Shandong Agr Univ, Tai An 271018, Shandong, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Tang, Xiaoli,Wang, Hongyan,Shao, Chuyang,et al. Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress[J]. PLOS ONE,2015,10(4):e0124421. |
| APA | Tang, Xiaoli,Wang, Hongyan,Shao, Chuyang,Shao, Hongbo,&Shao, HB .(2015).Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress.PLOS ONE,10(4),e0124421. |
| MLA | Tang, Xiaoli,et al."Global Gene Expression of Kosteletzkya virginica Seedlings Responding to Salt Stress".PLOS ONE 10.4(2015):e0124421. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Global Gene Expressi（1358KB） | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |||
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论