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题名:
Agrobacterium deltaense sp nov., an endophytic bacteria isolated from nodule of Sesbania cannabina
作者: Yan, Jun1; Li, Yan2; Han, Xiao Zeng1; Chen, Wen Feng3,4,5; Zou, Wen Xiu1; Xie, Zhihong2; Li, Meng1
刊名: ARCHIVES OF MICROBIOLOGY
ISSN号: 0302-8933
出版日期: 2017-09-01
卷号: 199, 期号:7, 页码:1003-1009
关键词: Agrobacterium ; Sesbania cannabina ; ANI
DOI: 10.1007/s00203-017-1367-0
产权排序: 第2完成单位
通讯作者: Han, Xiao Zeng(Chinese Acad Sci, Northeast Inst Geog & Agroecol, Key Lab Mollisols Agroecol, Harbin 150081, Heilongjiang, Peoples R China)
英文摘要: A Gram-negative, non-spore-forming, aerobic rods, strain YIC4121(T) was isolated from root nodule of Sesbania cannabina grown in Dongying (Yellow River Delta), Shandong Province, PR China. Based on phylogenetic analysis of 16 S rRNA gene sequences, strain YIC4121(T) was assigned to the genus Agrobacterium with 99.7, 99.3, 99.0, 98.8 and 98.7% sequence similarities to Agrobacterium radiobacter LMG140(T), A. pusense NRCPB10(T), A. arsenijevicii KFB 330(T), A. nepotum 39/7(T) and A. larrymoorei ATCC51759(T). Analysis of the concatenated housekeeping genes (recA-atpD-glnII), showed lower sequence similarities (<= 94.6%) between strain YIC4121(T) and other recognized Agrobacterium species. Strain YIC4121(T) shared whole-genome average nucleotide identities (ANI) 87.94, 91.27 and 77.42%, with A. pusense NRCPB10(T), A. radiobacter LMG140(T) and A. larrymoorei ATCC51759(T). The predominant cellular fatty acids were C-19:0 cyclo omega 8c, summed feature 2 - (C-12:0 aldehyde/unknown 10.9525), summed feature 8 (C-18:1.omega c/ C-18:1 omega 6c), C-16:0 3 OH and C-16:0. The G + C content of strain - YIC4121(T) was 59.80 mol%. Tween 80, lactulose, citric acid, alpha-ketoglutaric acid, glycyl- L-glutamic acid and 2, 3butanediol could not be utilized as carbon source, distinguishing strain YIC4121(T) from the other related species. Based on the distinctly genetic and phenotypic dissimilarity, a novel species Agrobacterium deltaense sp. nov. is proposed with YIC4121(T) (= HAMBI 3654(T) = LMG 2928(T)) as the type strain.
研究领域[WOS]: Microbiology
项目资助者: National Natural Science Foundation of China(41671299, 41371296, 41571219) ; national research program of China(2016YFD0200300) ; China Agriculture Research System(CARS-04) ; One Hundred-Talent Plan of Chinese Academy of Sciences (CAS)
关键词[WOS]: MULTILOCUS SEQUENCE-ANALYSIS ; GENETIC DIVERSITY ; CHERRY PLUM ; GEN. NOV. ; RNA GENES ; RHIZOBIUM ; TUMORS ; CLASSIFICATION ; MESORHIZOBIUM ; SINORHIZOBIUM
文章类型: Article
收录类别: SCI
原文出处: 查看原文
语种: 英语
WOS记录号: WOS:000407367500006
Citation statistics:
内容类型: 期刊论文
URI标识: http://ir.yic.ac.cn/handle/133337/23419
Appears in Collections:海岸带生物学与生物资源利用所重点实验室_期刊论文

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作者单位: 1.Chinese Acad Sci, Northeast Inst Geog & Agroecol, Key Lab Mollisols Agroecol, Harbin 150081, Heilongjiang, Peoples R China
2.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Key Lab Coastal Biol & Utilizat, Yantai 264003, Peoples R China
3.State Key Lab Agrobiotechnol, Beijing 100193, Peoples R China
4.China Agr Univ, Rhizobium Res Ctr, Beijing 100193, Peoples R China
5.China Agr Univ, Coll Biol Sci, Beijing 100193, Peoples R China

Recommended Citation:
Yan, Jun,Li, Yan,Han, Xiao Zeng,et al. Agrobacterium deltaense sp nov., an endophytic bacteria isolated from nodule of Sesbania cannabina[J]. ARCHIVES OF MICROBIOLOGY,2017,199(7):1003-1009.
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