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Title:
Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa
Author: Witkowski, Andrzej1; Li, Chunlian1; Zglobicka, Izabela2; Yu, Shu-xian3; Ashworth, Matt4; Bek, Przemyslaw D.1; Qin, Song3; Tang, Cheng3; Krzywda, Marta1; Ruppel, Manfred5; Theriot, Edward C.4; Jansen, Robert K.4,7; Car, Ana6; Plocinski, Tomasz2; Wang, Yin-chu3; Sabir, Jamal S. M.7; Daniszewska-Kowalczyk, Genowefa1; Kierzek, Agnieszka1; Hajrah, Nahid H.7
Source: JOURNAL OF COASTAL RESEARCH
ISSN: 0749-0208
Issued Date: 2016-09-01
Volume: 74, Pages:166-195
Keyword: Diatoms (Bacillariophyta) ; Bohai Sea ; Yellow Sea ; littoral zone ; metagenomics ; multigene approach (rbcL, psbC, SSU) ; biodiversity ; biogeography ; ubiquistic taxa ; Red Sea ; Adriatic Sea
Subject: Environmental Sciences & Ecology ; Physical Geography ; Geology
DOI: 10.2112/SI74-016.1
Rank: [ 1 ] Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland;Show the Organization-Enhanced name(s);[ 2 ] Warsaw Univ Technol, Fac Engn & Mat Sci, Warsaw, Poland Show the Organization-Enhanced name(s);[ 3 ] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Shandong, Peoples R China Show the Organization-Enhanced name(s);[ 4 ] Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA Show the Organization-Enhanced name(s);[ 5 ] Goethe Univ Frankfurt, Sect Electron Microscopy, Fac Biol, D-60438 Frankfurt, Germany Show the Organization-Enhanced name(s);[ 6 ] Univ Dubrovnik, Inst Marine & Coastal Res, Damjana Jude 12, HR-20000 Dubrovnik, Croatia Show the Organization-Enhanced name(s);[ 7 ] King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Biotechnol Res Grp, Jeddah 21589, Saudi Arabia
Corresponding Author: Witkowski, A (reprint author)Show the Organization-Enhanced name(s) Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland. witkowsk@univ.szczecin.pl
Department: 海岸带生物学与生物资源利用所重点实验室
English Abstract: Diatoms are important contributors to the benthic microeukaryote flora. This manuscript lays the foundation for future metagenomic and environmental sequencing projects off coastal China by curating diatom DNA sequences from the Yantai region of the Bohai and Yellow Seas (Northeast China). These studies are based on cultures established from samples collected in different seasons from marine littoral and supralittoral zones in 2013 and 2014. Thirty-six diatom strains were cultured successfully and identification of these clones was determined by light and scanning electron microscopy(LM and SEM) and DNA sequencing of the nuclear-encoded small subunit ribosomal RNA (SSU) and chloroplast-encoded rbcL and psbC genes. The strains primarily represent raphid pennate genera, such as Amphora, Amphora (Oxyamphora), Caloneis, Diploneis, Halamphora, Navicula, Nitzschia, Parlibellus, Pleurosigma, Surirella and Tryblionella. When the DNA markers from these strains were analysed in a multi-gene phylogeny, we found that some clones-particularly within the genera Amphora, Navicula and Nitzschia-show greater than expected genetic diversity despite their very similar morphology and morphometrics. We also compared the molecular and morphological identities of several seemingly ubiquitous marine littoral taxa in the genera Amphora and Nitzschia from the Indian Ocean and Atlantic Ocean, the Red Sea and Adriatic Sea to their Yellow Sea counterparts.
WOS Subject Extended: Environmental Sciences; Geography, Physical; Geosciences, Multidisciplinary
Funder: Polish National Science Centre in Cracow(N2012/04/A/ST10/00544 ; Polish Ministry of Science and Higher Education ; Chinese Academy of Sciences President's International Fellowship Initiative (PIFI) ; 2012/07/N/NZ8/02359)
WOS Keyword Plus: NITZSCHIA SPECIES BACILLARIOPHYCEAE ; SP-NOV BACILLARIOPHYTA ; MOLECULAR PHYLOGENY ; DIATOMS BACILLARIOPHYTA ; BARCODING DIATOMS ; INTERTIDAL ZONE ; SOUTHERN CHINA ; XIAMEN BAY ; DIVERSITY ; MORPHOLOGY
DOC Type: Article
Indexed Type: SCI
Language: 英语
WOS ID: WOS:000383795300017
Citation statistics:
Content Type: 期刊论文
URI: http://ir.yic.ac.cn/handle/133337/17205
Appears in Collections:海岸带生物学与生物资源利用所重点实验室_期刊论文

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description.institution: 1.Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland
2.Warsaw Univ Technol, Fac Engn & Mat Sci, Warsaw, Poland
3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Shandong, Peoples R China
4.Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA
5.Goethe Univ Frankfurt, Sect Electron Microscopy, Fac Biol, D-60438 Frankfurt, Germany
6.Univ Dubrovnik, Inst Marine & Coastal Res, Damjana Jude 12, HR-20000 Dubrovnik, Croatia
7.King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Biotechnol Res Grp, Jeddah 21589, Saudi Arabia

Recommended Citation:
Witkowski, Andrzej,Li, Chunlian,Zglobicka, Izabela,et al. Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa[J]. JOURNAL OF COASTAL RESEARCH,2016,74:166-195.
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文件名: Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa.pdf
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