| Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa | |
Witkowski, Andrzej1; Li, Chunlian1; Zglobicka, Izabela2; Yu, Shu-xian3 ; Ashworth, Matt4; Bek, Przemyslaw D.1; Qin, Song3; Tang, Cheng3; Krzywda, Marta1; Ruppel, Manfred5; Theriot, Edward C.4; Jansen, Robert K.4,7; Car, Ana6; Plocinski, Tomasz2; Wang, Yin-chu3; Sabir, Jamal S. M.7; Daniszewska-Kowalczyk, Genowefa1; Kierzek, Agnieszka1; Hajrah, Nahid H.7; Witkowski, A (reprint author)Show the Organization-Enhanced name(s) Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland. witkowsk@univ.szczecin.pl
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| 发表期刊 | JOURNAL OF COASTAL RESEARCH
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| ISSN | 0749-0208 |
| 2016-09-01 | |
| 卷号 | 74页码:166-195 |
| 关键词 | Diatoms (Bacillariophyta) Bohai Sea Yellow Sea Littoral Zone Metagenomics Biodiversity Multigene Approach (Rbcl Biogeography Psbc Ubiquistic Taxa Ssu) Red Sea Adriatic Sea |
| DOI | 10.2112/SI74-016.1 |
| 产权排序 | [ 1 ] Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland；Show the Organization-Enhanced name(s);[ 2 ] Warsaw Univ Technol, Fac Engn & Mat Sci, Warsaw, Poland Show the Organization-Enhanced name(s);[ 3 ] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Shandong, Peoples R China Show the Organization-Enhanced name(s);[ 4 ] Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA Show the Organization-Enhanced name(s);[ 5 ] Goethe Univ Frankfurt, Sect Electron Microscopy, Fac Biol, D-60438 Frankfurt, Germany Show the Organization-Enhanced name(s);[ 6 ] Univ Dubrovnik, Inst Marine & Coastal Res, Damjana Jude 12, HR-20000 Dubrovnik, Croatia Show the Organization-Enhanced name(s);[ 7 ] King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Biotechnol Res Grp, Jeddah 21589, Saudi Arabia |
| 作者部门 | 海岸带生物学与生物资源利用所重点实验室 |
| 英文摘要 | Diatoms are important contributors to the benthic microeukaryote flora. This manuscript lays the foundation for future metagenomic and environmental sequencing projects off coastal China by curating diatom DNA sequences from the Yantai region of the Bohai and Yellow Seas (Northeast China). These studies are based on cultures established from samples collected in different seasons from marine littoral and supralittoral zones in 2013 and 2014. Thirty-six diatom strains were cultured successfully and identification of these clones was determined by light and scanning electron microscopy(LM and SEM) and DNA sequencing of the nuclear-encoded small subunit ribosomal RNA (SSU) and chloroplast-encoded rbcL and psbC genes. The strains primarily represent raphid pennate genera, such as Amphora, Amphora (Oxyamphora), Caloneis, Diploneis, Halamphora, Navicula, Nitzschia, Parlibellus, Pleurosigma, Surirella and Tryblionella. When the DNA markers from these strains were analysed in a multi-gene phylogeny, we found that some clones-particularly within the genera Amphora, Navicula and Nitzschia-show greater than expected genetic diversity despite their very similar morphology and morphometrics. We also compared the molecular and morphological identities of several seemingly ubiquitous marine littoral taxa in the genera Amphora and Nitzschia from the Indian Ocean and Atlantic Ocean, the Red Sea and Adriatic Sea to their Yellow Sea counterparts. |
| 文章类型 | Article |
| 资助机构 | Polish National Science Centre in Cracow(N2012/04/A/ST10/00544 ; Polish Ministry of Science and Higher Education ; Chinese Academy of Sciences President's International Fellowship Initiative (PIFI) ; 2012/07/N/NZ8/02359) |
| 收录类别 | SCI |
| 语种 | 英语 |
| 关键词[WOS] | NITZSCHIA SPECIES BACILLARIOPHYCEAE ; SP-NOV BACILLARIOPHYTA ; MOLECULAR PHYLOGENY ; DIATOMS BACILLARIOPHYTA ; BARCODING DIATOMS ; INTERTIDAL ZONE ; SOUTHERN CHINA ; XIAMEN BAY ; DIVERSITY ; MORPHOLOGY |
| 研究领域[WOS] | Environmental Sciences; Geography, Physical; Geosciences, Multidisciplinary |
| WOS记录号 | WOS:000383795300017 |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.yic.ac.cn/handle/133337/17205 |
| 专题 | 海岸带生物学与生物资源利用重点实验室_海岸带生物学与生物资源保护实验室 |
| 通讯作者 | Witkowski, A (reprint author)Show the Organization-Enhanced name(s) Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland. witkowsk@univ.szczecin.pl |
| 作者单位 | 1.Univ Szczecin, Palaeoceanol Unit, Fac Geosci, Mickiewicza 18, PL-70383 Szczecin, Poland 2.Warsaw Univ Technol, Fac Engn & Mat Sci, Warsaw, Poland 3.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Shandong, Peoples R China 4.Univ Texas Austin, Dept Integrat Biol, Austin, TX 78712 USA 5.Goethe Univ Frankfurt, Sect Electron Microscopy, Fac Biol, D-60438 Frankfurt, Germany 6.Univ Dubrovnik, Inst Marine & Coastal Res, Damjana Jude 12, HR-20000 Dubrovnik, Croatia 7.King Abdulaziz Univ, Fac Sci, Dept Biol Sci, Biotechnol Res Grp, Jeddah 21589, Saudi Arabia |
| 推荐引用方式 GB/T 7714 | Witkowski, Andrzej,Li, Chunlian,Zglobicka, Izabela,et al. Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa[J]. JOURNAL OF COASTAL RESEARCH,2016,74:166-195. |
| APA | Witkowski, Andrzej.,Li, Chunlian.,Zglobicka, Izabela.,Yu, Shu-xian.,Ashworth, Matt.,...&Witkowski, A .(2016).Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa.JOURNAL OF COASTAL RESEARCH,74,166-195. |
| MLA | Witkowski, Andrzej,et al."Multigene Assessment of Biodiversity of Diatom(Bacillariophyceae) Assemblages from the Littoral Zone of the Bohai and Yellow Seas in Yantai Region of Northeast China with some Remarks on Ubiquitous Taxa".JOURNAL OF COASTAL RESEARCH 74(2016):166-195. |
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| Multigene Assessment（1945KB） | 期刊论文 | 作者接受稿 | 开放获取 | CC BY-NC-SA | 浏览 请求全文 | |
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